Drink and food aroma, mapped the way chemistry sees it

Where does
aroma come from?
Apple · Lychee · Aged caramel · Fishiness — all of it

Fruit, the sweetness of age, the fishiness of seafood — each is a completely different kind of molecule. People trained in chemistry carry a map that sorts aroma by where it comes from: built by yeast, sleeping in the raw material until fermentation wakes it, born when fats break apart, grown slowly by time. Drink or food, aroma follows the same handful of rules. This is that map, drawn for readers who have never studied chemistry.

Prologue · What aroma actually is

Aroma is small molecules arriving at your nose

Smelling something is the moment a very small molecule, drifting through the air, fits into a sensor deep in your nose. It works like a key in a lock: a different shape fits a different lock, and you perceive a different smell.

Only 3 properties really matter. Hold on to these and the jargon stops being an obstacle.

🎈

Lighter means smellier

The lighter and more volatile a molecule, the more easily it rides the air to your nose. Heavy molecules struggle to lift off at all.

🔬

A trace is enough

Powerful aroma compounds register at nanograms — one billionth of a gram. That minimum line is called the odour threshold.

🧬

Different makers

Some aroma molecules are built by yeast; others lie asleep in the raw material until fermentation wakes them. Each family is born a different way.

How to read this map Aroma sorts into 7 origins — ways of being born. Start with the overview below, which places all 11 families on those origins at a glance, then work through them one by one. Drink aromas and food aromas sit on the same map.
One · The whole picture

The map at a glance

Each row is an origin. From top to bottom: built by yeast, woken from the raw material, born when something breaks apart, grown by time, and so on. Every row holds the families born that way, in colour. Fruit, the smell of age, the smells counted as faults, and the smells of food all sit here as equals. Tap a tile to jump to that family.

Origin ↓
🧪
Synthesised by yeastThe raw material has no aroma yet. It is born only after passing through the factory called yeast.
🔓
Released from precursors during fermentationThe seed is in the raw material from the start — but odourless. Fermentation takes the lid off.
🎀
Released from glycosidesThe plant's essential oil is wrapped in sugar and hidden. Fermentation unties the string.
🔥
Formed by Maillard reactionAmino acids react with sugars under heat or long storage (the Maillard reaction) — the same route as the char on a dish.
🤝
Built by bacteria and yeast in relayNeither can manage it alone. Lactic acid bacteria do the prep; yeast finishes the job.
🦠
Produced by contaminating microbesBrought by bacteria or wild yeast that nobody meant to add. Brewing treats them as something to control, but as aroma they can become a signature.
Positive ± Context dependent Negative

Two aromas can smell alike and still stand far apart on this map, because they were born differently. That is the backbone of the whole thing.

One · Connections

Move the map around

One descriptor is often shared by compounds from completely different families. Rose belongs both to something yeast builds and to something the plant already held. Mushroom belongs to koji and to shiitake alike. Those overlaps, invisible in a table, appear here as lines. Drag to move, scroll to zoom, touch a node to surface only its connections. Tap a family or compound to jump to its entry.

Origin Family Compound Descriptor
Chemical PrecursorNeutral Look-alikeNeutral Co-occurringNeutral SynergyFavourable What happens at the molecular level — confirmable by measurement
Perception BridgeNeutral AmplifiedUnfavourable How people perceive it in the mouth. Drawn from the mechanism cards in pairing/. Because this is perception rather than measurement, the evidence tends to be weaker than in the chemical layer.
Touch a node and only the relations around it surface. Solid = established, dashed = reported, dotted = suggestive

Node size reflects how many connections it has, so descriptors shared by many compounds grow largest. Zoom with the +/− buttons, the scroll wheel, or a double-click; "Expand" fills the screen (Esc returns).

Two · How aroma is born

How aroma comes into being

The deepest difference between families is where the aroma wells up from. Some are assembled from scratch by yeast. Some are seeds already sleeping in the raw material, which fermentation wakes. Some appear when a molecule breaks apart. Some are grown by time. Line them up by origin and it falls into place.

🧪 Synthesised by yeastEsters · Fusel alcohols

Starts asNutrients in the raw material (amino acids, sugars)
Built by yeast during fermentation
AromaApple · Banana · Pineapple · Rose

The raw material has no aroma yet. It is born only after passing through the factory called yeast.

🔓 Released from precursors during fermentationThiols

Starts asOdourless precursors, built into the raw material
Cut free from precursors by yeast
AromaPassion fruit · Grapefruit

The seed is in the raw material from the start — but odourless. Fermentation takes the lid off.

🎀 Released from glycosidesTerpenes

Starts asTerpenes wrapped in sugar (glycosides)
Untied from sugar by yeast
AromaRose · Muscat · Lychee

The plant's essential oil is wrapped in sugar and hidden. Fermentation unties the string.

✂️ Derived from raw materialLipid oxidation · Amines · Sulfur

Starts asFat and protein in the raw material
Raw material breaks down
AromaFresh-cut grass · Mushroom · Fish oil · Fatty

Fats and the like break down or oxidise into aroma molecules — inside the drink, or on the food side.

🔥 Formed by Maillard reactionMaillard

Starts asAmino acids and sugars
Amino acids meet sugars
AromaCaramel · Soy sauce · Roasted nut · Honey

Amino acids react with sugars under heat or long storage (the Maillard reaction) — the same route as the char on a dish.

🤝 Built by bacteria and yeast in relayLactones

Starts asFat in the raw material (unsaturated fatty acids)
Bacteria and yeast pass the baton
AromaPeach · Coconut · Honey

Neither can manage it alone. Lactic acid bacteria do the prep; yeast finishes the job.

🦠 Produced by contaminating microbesVolatile phenols · Fatty acids

Starts asComponents of the raw material, such as ferulic acid
Made by unintended microbes
AromaSmoke · Spice, curry · Vanilla · Medicinal

Brought by bacteria or wild yeast that nobody meant to add. Brewing treats them as something to control, but as aroma they can become a signature.

The one-line version Aroma is either newly made, already there and woken, or changed into being. Yeast builds it; a precursor wakes; fat breaks; time grows it; sugar meets amino acid; an unintended microbe makes it. Those differences in origin are the differences between families — and the same frame explains the smell of an aged sake, the char on a grill, and the fishiness of seafood.
Three · The families in detail

Family by family

Now the families one at a time, in order of origin. Fruity and non-fruity get equal treatment. Four lines each — key compounds, the character of the molecule, how it forms, and keywords.

🧪 Synthesised by yeast

The raw material has no aroma yet. It is born only after passing through the factory called yeast.

Esters

"The juicy fruit that yeast makes as it ferments" — the lead role in ginjo aroma.

🍎 Apple 🍌 Banana 🍍 Pineapple 🍐 Pear
Key compoundsEthyl caproate (Apple, pineapple); Isoamyl acetate (Banana)
CharacterAn acid and an alcohol holding hands. Light, quick to evaporate, and showy on the lift. They also break down slowly in the bottle — which is why new sake smells the most fragrant.
How it formsYeast builds them itself during fermentation. Not the smell of the ingredients but the output of a factory called yeast metabolism. Cold, slow ginjo brewing raises them.
KeywordsGinjo aroma / yeast character / cold fermentation
Fusel alcohols

"A round foundation that yeast builds from amino acids" — heavy in excess, thin without it.

🌸 Rose 💐 Floral
Key compounds2-Phenylethanol (Sweet rose and florals); Isoamyl alcohol (Precursor to isoamyl acetate)
CharacterAlso built by yeast, like the esters, but heavier — working as thickness underneath rather than lifting off showily. In balance it reads as roundness; too much and it turns heavy and cloying.
How it formsFormed as yeast metabolises amino acids. They are also the raw material for esters — isoamyl acetate is made from isoamyl alcohol — so this family stands upstream of the esters.
KeywordsAmino-acid metabolism / roundness / upstream of esters

🔓 Released from precursors during fermentation

The seed is in the raw material from the start — but odourless. Fermentation takes the lid off.

Thiols

"Tropical notes sleeping in the raw material, woken by fermentation" — overwhelming in trace amounts.

🥭 Passion fruit 🍊 Grapefruit 🫐 Blackcurrant bud 🐈 Cat urine (at high concentration)
Key compounds3-Mercaptohexan-1-ol (Grapefruit, passion fruit); 4-Mercapto-4-methylpentan-2-one (Blackcurrant bud); 3-Mercaptohexyl acetate (Passion fruit, more exuberant still)
CharacterThe marker is sulfur. That sounds unpromising, but at vanishingly small amounts it turns into superb tropical fruit. Thresholds sit at a few to a few dozen ng/L — orders of magnitude lower than most — so a trace decides the whole aroma.
How it formsThey sleep in grape, hop or rice as odourless precursors, held by amino acids such as cysteine and glutathione. Only when a yeast enzyme cuts them loose during fermentation does the aroma appear.
KeywordsPrecursors / released by fermentation / Sauvignon Blanc / tropical hops

The precursors exist in particular bound forms — cysteine and glutathione conjugates. More amino acids does not mean more precursor. What limits the outcome is more often the yeast's β-lyase activity than the quantity of precursor present. ★ Not every sulfur-bearing aroma belongs here. Hydrogen sulfide, the mercaptans, DMS and DMTS used to sit in this family, but they arise differently — not by cutting a precursor free, but by sulfur-bearing amino acids breaking down — so they were split off as the sulfur off-flavour family. Structurally too: DMS is a thioether and DMTS a trisulfide, so neither is a thiol to begin with. Containing sulfur does not decide whether something is good. → see the sulfur off-flavour family

🎀 Released from glycosides

The plant's essential oil is wrapped in sugar and hidden. Fermentation unties the string.

Terpenes

"Florals and lychee the plant already owned" — the main body of essential oils.

🌸 Rose 🍇 Muscat 🥭 Lychee 💐 Lily of the valley, lavender
Key compoundsLinalool (Lily of the valley, citrus); Geraniol (Rose); Citronellol (Rose, citrus); cis-Rose oxide (The signature of lychee)
CharacterLiterally what essential oil is made of. Lavender and rose belong to the same group. They carry the floral, citrus and muscat side of showiness.
How it formsThey sleep in the plant tied to a sugar (as glycosides). When a yeast enzyme (β-glucosidase) unties the sugar during fermentation, the aroma is set free — the same "sleeping and woken" pattern as thiols.
KeywordsGlycosides / essential oil / muscat aroma / Gewürztraminer

✂️ Derived from raw material

Fats and the like break down or oxidise into aroma molecules — inside the drink, or on the food side.

Lipid oxidation products

"Green, oily notes born when fat oxidises and snaps" — flavour in traces, a fault as it rises.

🌿 Fresh-cut grass 🍄 Mushroom 🐟 Fish oil Fatty
Key compoundsHexanal (Cut grass, green leaf); 1-Octen-3-one (Metallic mushroom); 1-Octen-3-ol (Mushroom)
CharacterWhen unsaturated fat reacts with oxygen and breaks, the short fragments start to smell. Because they come from one pathway, they line up continuously from cut grass to fish oil. Their molecular shapes do not match — most are aldehydes, but some, like the mushroomy 1-octen-3-ol, take the form of an alcohol. What holds this family together is where they came from, not what they look like.
How it formsFormed when the fat in the raw material oxidises. This can happen inside the drink or on the food side. Iron in wine has been reported to drive lipid oxidation in seafood — and what appears there belongs to this family. In sake, koji enzymes break down linoleic acid late in koji-making, producing part of the smell of koji itself.
Where it ends up depends on which fat it started from. "The fat oxidised" has more than one outcome. In a study of oxidised pork liver, oxidised arachidonic acid turned metallic and liver-like, while oxidised linolenic acid turned fishy. The acid broken down in sake koji is linoleic, and that one becomes the mushroomy C8 compounds. Part of why this family spans cut grass to fish oil is that the pathway is shared but the entrances are not.
KeywordsLipid oxidation / freshness inverted / valued by absence

⚠️ Acetaldehyde and diacetyl are the two that do not fit this family's story. Neither arises from fat oxidising; both come out of fermentation itself (acetaldehyde one step short of alcohol, diacetyl from yeast and lactic acid bacteria). They were placed here long ago because their molecular shape is a carbonyl — but their origin is another matter. → The same caveat appears in each of their own cards. ⚠️ The claim that the starting fat decides the destination comes from a study of pork liver — not seafood, and not sake. The direction holds for lipid oxidation generally, but it has not been measured on seafood as such.

Volatile amines

"The fishiness a fish gives up as time passes" — add acid and it stops reaching your nose.

🐟 Fishy
Key compoundsTrimethylamine (The fishiness of fish)
CharacterA weakly alkaline molecule containing nitrogen. Meet it with acid and it becomes a salt that no longer evaporates, so it never reaches your nose. That is what squeezing a lemon actually does.
How it formsFormed as a compound the fish already carried (TMAO) breaks down over time. Saltwater and deep-sea fish start with more of it. A family that appears only on the food side, never in the drink.
KeywordsFishy odour / neutralised by acid / food side
Sulfur off-flavours

"Egg, onion and pickled radish, released when sulfur-bearing amino acids come apart" — potent in the smallest traces.

🥚 Boiled egg 🧅 Onion 🥒 Pickled radish 🌽 Nori, corn soup
Key compoundsDimethyl trisulfide (Pickled radish)
CharacterThey carry sulfur, just as the tropical thiols do — but these are the ones that come out of something breaking. All are small molecules, and the lowest amount a person can detect sits orders of magnitude below most aromas. A trace on the analysis sheet still stands up clearly in the glass.
How it formsThey come from the sulfur-bearing amino acids — methionine and cysteine — losing their sulfur. Several things can pull it loose: yeast metabolism during fermentation, precursors breaking down in storage, and heat and light. That is a different route from the thiols (3MH, 4MMP), where yeast cuts an odourless precursor free. This family is decided less by how the sake was made than by how it has been kept.
KeywordsHineka and light-struck / very low thresholds / decided by storage

⚠️ Sulfur does not mean bad. 3MH and 4MMP, which carry the tropical notes, contain sulfur too. What separates them is not the sulfur but how they arise, and at what concentration. ★ Mercaptans are, structurally, thiols proper — they carry an SH group. They sit here anyway because of how they are made: not yeast cutting a precursor free, but methionine breaking down under heat and light. This map is arranged by how things are made. ★ Hydrogen sulfide can be smelled in moromi and in sake just after pasteurisation, but is said to be barely perceptible in bottled products. Bear that in mind before counting it as a fault in something off the shelf. ★ The methyl bromide fumigation of old rice, known as a source of DMS, is no longer permitted in Japan. Do not drop the fact that this is history.

🔥 Formed by Maillard reaction

Amino acids react with sugars under heat or long storage (the Maillard reaction) — the same route as the char on a dish.

Maillard & ageing aromas

"Caramel and soy sauce, born where amino acids meet sugar" — the same route as the char on a dish.

🍮 Caramel Soy sauce 🌰 Roasted nut 🍯 Honey
Key compoundsSotolon (Caramel, black sugar); HEMF (Soy sauce); Methional (Cooked potato)
CharacterTheir structures have little in common; their origin does. Bread crust, seared meat, the savour of soy sauce and the sweetness of aged sake are, chemically, products of one reaction.
How it formsFormed when amino acids react with sugars under heat or long storage (the Maillard reaction). In sake they are detected far more strongly in aged bottles than in new ones. ★ Change what goes in and you change what comes out. The amino acids and sugars were themselves reshaped by an earlier stage — fermentation. In coffee, beans fermented with an inoculated yeast are reported to differ in aroma from uninoculated ones after roasting, and the difference shows up more clearly in a light roast than a dark one. Fermentation and roasting look like separate steps; the first decides what the second has to work with.
KeywordsLong ageing / soy sauce and black sugar / OAV

★ Being present in quantity and actually smelling of something are not the same. Only compounds whose concentration divided by their threshold (the OAV) reaches 1 are thought to contribute to what you smell. Furfural climbs in aged sake, yet even in stored samples its OAV never gets there.

🤝 Built by bacteria and yeast in relay

Neither can manage it alone. Lactic acid bacteria do the prep; yeast finishes the job.

Lactones

"Peach and coconut — bacteria prep it, yeast finishes it" — the side that thickens in kimoto and yamahai.

🍑 Peach 🥥 Coconut 🍯 Honey
Key compoundsγ-Nonalactone (Sweet honey); γ-Decalactone (Peach, butter)
CharacterA molecule biting its own tail into a ring. It only smells once the ring closes — the open chain is odourless. The family shares one skeleton and differs only in carbon count; the longer the chain, the heavier and sweeter the impression.
How it formsReported to arise in two stages from fat in the raw material. Lactic acid bacteria first add water to a fatty acid, giving it an arm; yeast then trims the chain shorter. Finally the arm joins the far end and the ring closes. Neither organism can do it alone. In sake, yamahai brewing — where lactic acid bacteria are at work — is reported to carry more of these than sokujo. They are also present in meat and dairy: a family that appears on both sides of the table.
KeywordsKimoto & yamahai / bacteria and yeast / sweet fatty notes

⚠️ "Lactone" names a molecular shape, not an origin. Sotolon in aged sake carries the same ring but sits with the Maillard family; the sweet notes picked up from a cask are dissolved out of the wood, not built in the drink. Neither belongs here. The wagyu lactones (γ-hexalactone, γ-undecalactone) are reported to rise as fat oxidises during storage — a different origin from the drink side. They are listed together because the shape matches, but their histories differ.

🦠 Produced by contaminating microbes

Brought by bacteria or wild yeast that nobody meant to add. Brewing treats them as something to control, but as aroma they can become a signature.

Volatile phenols

"Something in the raw material, rebuilt by an uninvited microbe into smoke" — a deduction at judging, possibly something else at the table.

🔥 Smoke 🌶 Spice, curry 🍦 Vanilla Medicinal
Key compoundsGuaiacol (Medicinal, smoky); 4-Vinylguaiacol (Curry, spice); Vanillin (Vanilla)
CharacterAn aromatic ring with a hydroxyl group attached. They build a strong impression in a direction quite unlike fruit — smoke, medicine, spice — and are easy to spot even in traces.
How it formsMade when bacteria nobody meant to add decarboxylate ferulic acid from the rice. Sake and shochu yeasts cannot do this. In smoked foods they transfer straight from the smoke.
KeywordsFerulic acid / contaminating microbes / smoke

⚠️ At the National New Sake Appraisal, entries flagged for this character tend to score worse overall, and judges are reported to read it as an off-flavour. We do not write "this aroma means it is a good sake."

Volatile fatty acids

"Cheese and sweat, left behind by microbes nobody wanted" — the side that gets managed as a fault.

🧀 Cheese Natto, sweaty Ginkgo nut
Key compoundsButyric acid (Ginkgo nut, cheese); Isovaleric acid (Sweaty, like natto)
CharacterShort-chain acids. In cheese and other ferments they are a signature; in sake they sit firmly on the unwanted side.
How it formsThey come from contamination by microbes nobody meant to add, such as hiochi bacteria or Bacillus subtilis. Despite sharing the name, they play a different role from the fatty acids that feed ester formation.
KeywordsHiochi bacteria / Bacillus subtilis / off-flavours
Four · By drink

Which family shows up in which drink?

Narrowing to fruity aromas: the same molecules turn up across categories. The tropical note in a Sauvignon Blanc and the one in a tropical IPA are the same thiol. Nor is this only about alcohol — coffee fermentation builds the same compounds by the same route as sake. Find where the cup in front of you sits.

Drink Families at work What you smell
Ginjo / Daiginjo Esters Apple, pineapple, banana (ginjo aroma)
Low-polish "juicy"
sake
Esters + Thiols
+ malic acidity
Juiciness, tropical notes, fresh acidity
Sauvignon
Blanc
Thiols Passion fruit, grapefruit, blackcurrant bud
Tropical IPA
(craft beer)
Thiols + Terpenes Passion fruit, citrus, florals (from hops)
Gewürz-
traminer
Terpenes Lychee, rose, muscat
Muscat wines
Imo shochu
Terpenes Muscat, florals, citrus
Coffee
(fermented, light roast)
Esters + Fusel alcohols + Terpenes
+ Maillard on roasting
Florals, fruit, vanilla (from fermentation); roast notes on top
What "juicy" sake actually is The cast of molecules is much the same as in ginjo. What differs: (1) more acid — malic in particular — building the skeleton of "juiciness"; (2) a shift in ester balance toward isoamyl acetate, the softer banana side; (3) thiols adding a tropical edge; (4) the freshness of unpasteurised namazake. It is the combination, not any one of them.
Five · The compounds

Look it up by name

All 44 compounds across the 11 families. Drink and food aromas share one table. The family cards only name a few key compounds, so this is the only place the actual data lives. The Drink / Food tags say which side the aroma stands on — a compound already in the glass is a different thing from one created when drink meets dish.

EstersBuilt by yeast during fermentation

"The juicy fruit that yeast makes as it ferments" — the lead role in ginjo aroma.

CompoundDescriptorsEffectThresholdConfidence
Ethyl caproateDrink
Apple, pineapple
Apple · Pineapple · Melon
At other concentrations, or alongside other compounds, it can read as melon or fully ripe fruit
Builds 120 µg/LDiscrimination threshold in sake. Sake holds anywhere from a trace to 15 mg/L — over a hundred times the threshold at the top end Reported
How it forms, and notes

Yeast makes caproic acid as an intermediate of fatty acid synthesis, and that is then esterified with ethanol.

One of the esters that make up ginjo aroma. Yeasts bred to produce more of it are reported.

★ For that reason the textbook line that ginjo aroma will not appear unless the rice is heavily polished may now be too simple. With high-ester yeasts (Kyokai No. 1801 and others) in wide use, it can form without heavy polishing. ⚠️ But that second half, tying yeast strain to polishing ratio, is inference; no supporting report has been found.

Isoamyl acetateDrink
Banana
Banana · Pear Builds 270 µg/LDiscrimination threshold in sake; sake holds a trace to 15 mg/L Reported
How it forms, and notes

Formed when yeast esterifies isoamyl alcohol (one of the fusel alcohols) with acetic acid.

Its precursor is a fusel alcohol, so these two families stand in an upstream-downstream relation. In juicy-style sake the fruit character can sit on this softer side rather than on ethyl caproate.

Formation is reported to be suppressed where unsaturated fatty acids are abundant. Part of the reason for the length of steaming, and for polishing the rice further in ginjo, lies here. Cutting the fat is what leads to more aroma.

Methyl salicylateDrink
Wintergreen — the cold behind the mint
Medicinal · Fresh-cut grass
Called medicinal, but in wine it works on the cool, fresh side
±Swings Reported
How it forms, and notes

⚠️ Not established in the sources. It is known to be higher in wines made without sulfites, but why it is higher is not shown.

The shape of the molecule is an ester, but yeast does not make it. It does not fit this family's account of yeast assembling the molecule.

★ Identified as an odour-active compound in Bordeaux reds made without sulfite, by aroma fractionation and GC-O. Content is significantly higher in the sulfite-free wines, and it is reported to work on both the fruit character and the freshness.

The interesting part is that smelled on its own it is medicinal, like a compress, yet inside the wine it works on the side of coolness. The impression of a compound and the impression that compound brings to a wine are separate things.

⚠️ Why it is higher without sulfite is not answered by the source. Whether sulfite stops something, or a different route runs, is not known.

⚠️ Wine research; it does not cover sake.

Ethyl acetateDrink
Fruit in a trace, glue in quantity
Apple · Pear · Solvent, nail polish remover
The clearest case in this map of a molecule that changes face with concentration. In small amounts it disappears into the other esters as part of the fruit; as it rises it swings towards glue and nail polish remover. Where the line falls moves with what else is in the glass and how the drink is served, so there is no "a fault above X mg/L" to quote.
±Swings Reported
How it forms, and notes

Made by yeast joining acetic acid and ethanol. The simplest combination among the esters, and often the most abundant ester in both sake and coffee fermentation.

★★ That yeast increases it has been pinned down experimentally. In a study inoculating Pichia fermentans into on-farm washed processing, ethyl acetate and isoamyl acetate rose together with ethanol and acetaldehyde. The study also followed through to the roasted beans, where yeast-derived volatiles stayed higher in the inoculated treatment. Cupping brought out vanilla and floral impressions.

Coffee fermentation turns up the same cast as sake. In a study of spontaneous fermentation in Mozambique, read from both the microbial and the metabolite side, the three most abundant volatiles produced were linalool, phenethyl alcohol and ethyl acetate; the gene repertoire of the organisms involved points to the Ehrlich pathway and ester biosynthesis as the central routes to aroma. The same route that makes isoamyl alcohol and phenethyl alcohol in sake is turning in coffee as well.

★ In yeast-inoculated coffee fermentation, esters fall on roasting, yet the inoculated treatment is reported to stay significantly higher than the control. An instance of a difference set at fermentation surviving a high-temperature step.

⚠️ Both are coffee research, not sake research. The threshold and content in sake have not yet been confirmed.

ThiolsCut free from precursors by yeast

"Tropical notes sleeping in the raw material, woken by fermentation" — overwhelming in trace amounts.

CompoundDescriptorsEffectThresholdConfidence
3-Mercaptohexan-1-olDrink
Grapefruit, passion fruit
Grapefruit · Passion fruit ±Swings 60 ng/LValue from patent WO2010070838A1 — note this is not a peer-reviewed source Reported
How it forms, and notes

Present in the raw material as odourless cysteine and glutathione conjugates, and set free during fermentation when a yeast beta-lyase cleaves them.

Established in wine and beer, but public quantitative data for sake is thin. In beer, disulfide-bound precursors have been found in malt and hops; during fermentation 65-82% are reduced and the 3MH concentration rises 9.5- to 14.2-fold.

4-Mercapto-4-methylpentan-2-oneDrink
Blackcurrant bud
Blackcurrant bud · Passion fruit
Blackcurrant bud or box hedge when low; swings to the unpleasant side when high
±Swings 1.2 ng/LDetection threshold in sake. Iizuka et al. 2019 quote this from an earlier report rather than measuring it themselves. The 25 samples they analysed held 5–14 ng/L — but those samples were picked because judges had flagged a thiol-like character, so the range is not the spread across all competition sake. Established
How it forms, and notes

Present in the raw material as a precursor, and set free during fermentation by yeast enzymes.

The best-studied thiol in sake. In spiking trials, a sulfury note lifts once the concentration passes 8.0 ng/L.

The interesting part comes after that. Above 16.0 ng/L the muscat, lychee and citrus notes do grow stronger — but the overall flavour rating of the sake went down. More of the showy aroma did not make a better drink. Worth keeping as the counter-example to "more aroma is better".

3-Mercaptohexyl acetateDrink
Passion fruit, more exuberant still
Passion fruit Builds 4 ng/LFrom patent WO2010070838A1; an order of magnitude below 3MH Reported
How it forms, and notes

Formed when 3MH released during fermentation is esterified with acetic acid by yeast.

A derivative of 3MH, so it presupposes that 3MH is there. Its threshold is extremely low, and a trace is enough to set the direction of the aroma.

TerpenesUntied from sugar by yeast

"Florals and lychee the plant already owned" — the main body of essential oils.

CompoundDescriptorsEffectThresholdConfidence
LinaloolDrink
Lily of the valley, citrus
Lily of the valley, lavender · Citrus · Muscat Builds 40 µg/LMeasured in a study of monoterpene alcohols in imo shochu Reported
How it forms, and notes

Stored in the plant as a glycoside, and set free during fermentation when a yeast beta-glucosidase removes the sugar.

In wine it is treated as the main factor in muscat aroma. Public quantitative data for sake is thin.

In coffee fermentation too it comes top among the abundant volatiles. In the study of spontaneous fermentation in Mozambique, linalool was most abundant alongside phenethyl alcohol and ethyl acetate, emerging as a predictor of floral scores. ⚠️ That study, however, does not separate where the linalool came from — whether glycosides in the raw material came undone, or microbes made it. The grounds on which this map places linalool on the released-from-glycoside side are other sources, not this study.

⚠️ Coffee research, not a statement about sake.

GeraniolDrink
Rose
Rose · Citrus Builds 80 µg/LMeasured in a study of monoterpene alcohols in imo shochu Reported
How it forms, and notes

Stored in the plant as a glycoside, and set free during fermentation when the sugar comes off.

In beer, yeast is reported to convert geraniol into citronellol during fermentation. An instance of hop-derived aroma not simply coming through as it is, but being remade by the fermentation.

CitronellolDrink
Rose, citrus
Rose · Citrus Builds Reported
How it forms, and notes

Released from glycosides, and also reported to arise when yeast converts geraniol during fermentation.

cis-Rose oxideDrink
The signature of lychee
Lychee · Rose Builds Suggestive
How it forms, and notes

From the grapes. The route usually described is cyclisation from citronellol.

Often described as the compound that decides the lychee note of Gewurztraminer. But the lychee impression also shifts with the overlap of other terpenes, so it may not be settled by this one molecule alone.

⚠️ Of everything set out here, this compound has the thinnest support. Neither the threshold nor the formation route has been traced back to the original research.

Fusel alcoholsBuilt by yeast during fermentation

"A round foundation that yeast builds from amino acids" — heavy in excess, thin without it.

CompoundDescriptorsEffectThresholdConfidence
2-PhenylethanolDrink
Sweet rose and florals
Rose · Floral Builds 130 mg/LDiscrimination threshold in sake. Sake holds 75–200 mg/L — a range that straddles the threshold Reported
How it forms, and notes

Formed as yeast metabolises the amino acid phenylalanine. More is made at a higher rice polishing ratio and a higher fermentation temperature.

Within the showiness of ginjo, it carries the floral side rather than the fruit side. The source treats it as part of the base aroma of sake.

★ The interesting part is that the range of content (75-200 mg/L) straddles the threshold (130 mg/L). The same compound sits right on the border of being perceptible or not, depending on the sake. There are also yeasts bred to make more of it.

★★ In coffee fermentation this compound also comes up as a lead player. In the study of spontaneous fermentation in Mozambique, read from both the microbial and the metabolite side, the three most abundant volatiles produced were linalool, phenethyl alcohol and ethyl acetate, emerging as predictors of floral and fruity scores. In yeast-inoculated coffee fermentation it rose 2- to 10-fold over the control, and the difference remained after roasting. This route from phenylalanine, the Ehrlich pathway, works the same way in sake and in coffee.

⚠️ Both are coffee research, not statements about sake.

Isoamyl alcoholDrink
Precursor to isoamyl acetate

Never the lead on its own, but shows up as heaviness in quantity
±Swings 68 mg/LDiscrimination threshold in sake. Sake holds 70–270 mg/L — even the low end already sits above the threshold Reported
How it forms, and notes

Formed as yeast metabolises leucine. The higher the rice polishing ratio and the fermentation temperature, the more is made.

Esterified, this becomes isoamyl acetate — the banana note. It is where the fusel alcohols and the esters join up.

Every sake carries it above the threshold (even the bottom of the reported range sits higher). So it is never a question of present or absent, only of how much: the source treats it as sake's ground note. In quantity it turns marker-pen.

★★ Coffee fermentation makes the same compound by the same route. In washed coffee fermentations inoculated with yeast (Hanseniaspora uvarum / Pichia kudriavzevii), isoamyl alcohol is reported to rise 2- to 10-fold over the control, and the difference remained after roasting. This route from amino acid to fusel alcohol, the Ehrlich pathway, comes up in other studies too as a central route to aroma in coffee fermentation. The same mechanism that makes the ground note of sake is turning in a drink that is not alcohol at all.

⚠️ Coffee research, not a statement about sake.

Lipid oxidation productsRaw material breaks down

"Green, oily notes born when fat oxidises and snaps" — flavour in traces, a fault as it rises.

CompoundDescriptorsEffectThresholdConfidence
HexanalFood
Cut grass, green leaf
Fresh-cut grass · Fatty
The GC-O note in Tamura 2010 (Table 3) reads fat, green — consistent with this card.
Fault Established
How it forms, and notes

Formed when unsaturated fatty acids oxidise and cleave.

One of the compounds identified as contributing to the fishy aftertaste in dried scallop soaked in red wine. ★ It is not an aroma the wine carries — it appears on the food side, once wine and seafood meet.

HeptanalFood
Oily and green
Fatty · Fresh-cut grass
⚠️ This conflicts with the source. The GC-O note in Tamura 2010 (Table 3) reads chemical, mentioning neither fat nor green. The "oily and green" here was inferred from the neighbouring compound on the same pathway, not written by anyone who smelled it. ⚠️ That said, a GC-O note is one terse word at the sniffing port and depends on the matrix. Neither reading has been settled.
Fault Established
How it forms, and notes

Formed when unsaturated fatty acids oxidise and cleave.

A product of the same pathway as hexanal. One carbon longer, so the fatty side is said to come forward ahead of the green — ★ But that sentence is an inference from the neighbouring compound, not the words of anyone who smelled it.

NonanalFood
Fat, citrus peel
Fatty · Citrus
The GC-O note in Tamura 2010 (Table 3) reads Oily. The fatty side agrees, but citrus is not mentioned. The citrus character is widely reported in flavour work, not supported by this paper.
Fault Established
How it forms, and notes

Formed when unsaturated fatty acids oxidise and cleave.

DecanalFood
Citrus peel, fat
Citrus · Fatty
⚠️ This conflicts with the source. The GC-O note in Tamura 2010 (Table 3) reads Green, mentioning neither citrus nor fat. The citrus-peel character is widely reported in flavour work but is not supported by this paper. ⚠️ A GC-O note is one terse word at the sniffing port and depends on the matrix. Neither reading has been settled.
Fault Established
How it forms, and notes

Formed when unsaturated fatty acids oxidise and cleave.

(E,Z)-2,4-HeptadienalFood
Fish oil
Fish oil · Fishy
★ In Tamura 2010 (Table 3) this is the only compound noted as Fishy. The other nine are described as fat / green / chemical / metallic / mushroom / oily — "fishy" appears exactly once. In the same experiment it was not detected at all in iron-free model wine and appeared only in the iron-bearing red. This one sits at the centre of the fishiness.
Fault Established
How it forms, and notes

Formed when polyunsaturated fatty acids oxidise and cleave.

A form that keeps two double bonds. Within the fishiness, it carries the impression closest to fish oil itself. ★ In the wine-and-seafood experiment it was not detected at all in iron-free model wine, and appeared only in the iron-bearing red (0 → 4.2 μg/kg). Where the other compounds were already present and simply rose, this one is created from nothing.

1-Octen-3-oneDrinkFood
Metallic mushroom
Mushroom · Metallic
The very same molecule is a key pleasant aroma in shiitake and part of the fishiness in oxidised fat.
±Swings Established
How it forms, and notes

Formed when fatty acids break down. In sake it arises late in koji making, when linoleic acid undergoes oxidative cleavage by the enzymes of the koji mould, contributing to the smell of koji.

An example of the limits of "they share a compound, so they pair." The same molecule flips meaning depending on what sits around it. In raw shiitake it is held to be the single most important aroma compound by OAV. ★ In the experiment on fishiness from pairing wine with seafood, it rose roughly sixfold in dried scallop soaked in iron-bearing red wine (0.09 → 0.52 μg/kg), while its counterpart alcohol did not rise significantly. ★ It also appears as a metallic contributor in oxidised pork liver, where it is placed on the branch that oxidised arachidonic acid takes.

1-Octen-3-olDrinkFood
Mushroom
Mushroom ±Swings Established
How it forms, and notes

Formed when fatty acids break down. In sake it arises late in koji making, through the enzymes of the koji mould.

The counterpart to 1-octen-3-one, though the ketone is reported not to arise from oxidation of this alcohol. It is sometimes listed among the components of fishy odour. ★ However, in the experiment on fishiness from pairing wine with seafood, this compound did not rise significantly (8.3 → 10.0 μg/kg). What rose roughly sixfold in the same experiment was the ketone. Lumping the C8 compounds together as "part of the fishiness" hides this difference; the -one and the -ol behave differently.

DiacetylDrink
Cultured butter, yoghurt
Butter, yoghurt ±Swings 83 µg/LDiscrimination threshold in sake; sake holds a trace to 500 µg/L Established
How it forms, and notes

Formed by the metabolism of yeast and lactic acid bacteria - within this family, an exception in being fermentation-derived.

It sits here by the shape of the molecule (a ketone), but the way it forms does not fit the family description. In sake it is treated as a fault.

★ In wine there are situations where having little of it works on the side of showing something. Red wines made without sulfite are reported to be lower in both acetaldehyde and diacetyl than conventionally made ones, and that difference is held to affect how fresh the wine feels.

⚠️ That report is on wine and does not cover sake.

★ In coffee fermentation too, in a treatment co-inoculated with lactic acid bacteria and yeast, the closely related 2,3-butanediol (made by the bacteria) was reported to contribute to the aroma. In the yeast-inoculated treatment 2,3-butanedione, that is diacetyl itself, was detected. The thread that it turns up where lactic acid bacteria are present runs through sake and coffee alike.

⚠️ That is coffee research, not a statement about sake.

AcetaldehydeDrink
Green apple, the cut stem of grass
Apple · Fresh-cut grass
Green-apple freshness in small amounts; oxidised in larger ones
±Swings 11 mg/LDiscrimination threshold in sake; sake holds a trace to 110 mg/L. ⚠️ The wine sources give no threshold, so use this figure for sake only. Established
How it forms, and notes

Appears during fermentation one step short of ethanol, and either stays or increases later through oxidation. In sake it rises when alcohol is added while intermediate metabolites are still abundant.

It sits here by the shape of the molecule (an aldehyde), but the way it forms does not fit the family description. The same treatment as diacetyl.

★ In sake it is called kiga-yoshu, a light smell said to suggest wood, grass and green apple.

★ It has the property of binding with sulfite, and that is where it gets interesting. In wines with sulfite added it accumulates in the bound form; in wines without, there is nothing for it to bind to.

Where it goes instead is colour. Unbound acetaldehyde gets used as a bridge joining pigment and tannin. Two things then happen at once: the concentration falls and the colour deepens toward purple (the colour difference exceeds the human perceptual threshold). One property accounts for both the aroma side and the colour side.

Bordeaux reds made without sulfite are reported to be lower in both acetaldehyde and diacetyl than conventionally made ones, and that difference is held to affect how fresh the wine feels. A compound of the kind where absence is what shows something.

⚠️ Everything above about sulfite and colour is wine research. It does not cover sake. The threshold, content and name on the sake side come from the National Research Institute of Brewing report on the smells of sake and where they come from. What holds for wine does not necessarily hold for sake.

LactonesBacteria and yeast pass the baton

"Peach and coconut — bacteria prep it, yeast finishes it" — the side that thickens in kimoto and yamahai.

CompoundDescriptorsEffectThresholdConfidence
γ-NonalactoneDrink
Sweet honey
Honey · Coconut Builds Established
How it forms, and notes

Lactic acid bacteria work on a fatty acid, and yeast trims it into a ring.

Detected at the sniffing port as "sweet, honey". One of the compounds present at higher concentrations in entries flagged for a spicy, 4VG-like character. ★ Those entries came from a new-sake competition — they were not aged sake.

γ-DecalactoneDrinkFood
Peach, butter
Peach · Butter, yoghurt Builds Established
How it forms, and notes

A fatty acid is transformed and closes into a ring.

Detected in sake GC-O as butter, baked. On the beef side it is listed among the compounds correlating strongly with sensory scores for wagyu aroma. It appears on both sides of the table.

⚠️ It is not the one that was higher in the sake flagged as spicy / 4VG. The lactones showing significant differences were gamma-nonalactone, gamma-dodecalactone and dehydromevalonic lactone; this compound was detected in both the flagged and the control samples. So it is no grounds for saying that this aroma and 4VG turn up together.

γ-DodecalactoneDrink
Coconut and vanilla sweetness
Coconut · Vanilla Builds Established
How it forms, and notes

A fatty acid is transformed and closes into a ring.

In the worked examples of a patent, this group of compounds was rated as "sweet-smelling" above 100 µg/L and "like coconut or vanilla" above 300 µg/L. ⚠️ This is a patent, not peer-reviewed literature.

γ-HexalactoneFood
Sweet, leaning fatty
Coconut Builds Established
How it forms, and notes

A fatty acid is transformed and closes into a ring.

One of the compounds that correlated strongly with sensory scores for wagyu aroma. ★ The source is a study of beef; it says nothing about any commonality with the lactones in sake.

γ-UndecalactoneFood
Peach
Peach Builds Established
How it forms, and notes

A fatty acid is transformed and closes into a ring.

One of the compounds that correlated strongly with sensory scores for wagyu aroma.

Volatile phenolsMade by unintended microbes

"Something in the raw material, rebuilt by an uninvited microbe into smoke" — a deduction at judging, possibly something else at the table.

CompoundDescriptorsEffectThresholdConfidence
GuaiacolDrinkFood
Medicinal, smoky
Medicinal · Smoke ±Swings 22 µg/LDetection threshold in sake Established
How it forms, and notes

Formed when ferulic acid from the raw material is transformed by microbes. In smoked foods it transfers from the smoke itself.

Among entries flagged for a spicy, 4VG-like character, this was the compound that differed most from the controls — roughly sevenfold on average. In katsuobushi it is counted among the main compounds behind the smoky aroma. It appears on both the drink side and the food side.

★★ The cleanest demonstration that a particular microbe makes a particular compound . In a study that inoculated nine different starter cultures separately into coffee fermentation, guaiacol was produced only in the treatment inoculated with Bacillus subtilis. The authors singled it out as a marker that this organism had been at work. It supports, from the other direction, this map's placing of guaiacol on the microbe-made side.

⚠️ That is a study of coffee, not a statement about sake. Whether the same organism does the same thing in sake cannot be drawn from this source.

4-VinylguaiacolDrink
Curry, spice
Spice, curry · Smoke ±Swings 52 µg/LDiscrimination threshold in sake; sake contains 0–350 µg/L Established
How it forms, and notes

Formed when contaminating bacteria and wild yeasts decarboxylate the ferulic acid in the rice. Sake and shochu yeasts do not do this.

Found in junmai sake among others. In entries flagged for this character, at least 70% are estimated to sit above the threshold. ⚠️ At judging competitions this aroma is treated as a fault.

4-EthylguaiacolDrink
Smoked, medicinal
Smoke · Medicinal ±Swings Reported
How it forms, and notes

Said to be formed by reduction of 4-vinylguaiacol.

★ Its presence in sake has itself been confirmed. In a survey of competition entries it was detected in only a very small number of samples. Where 4-vinylguaiacol turns up routinely, this one rarely appears.

⚠️ The threshold is unconfirmed. The route by reduction of 4VG is known in wine, but has not been confirmed in sake.

VanillinDrink
Vanilla
Vanilla Builds 78.9 µg/LDetection threshold in sake Established
How it forms, and notes

Formed as compounds from wood, or phenolics from the raw material, are transformed.

★ Under ambient storage it becomes detectable somewhere between 11 and 15 years. In young ginjo it sits below the threshold. Aged samples span a wide range, from traces up to 1727.5 µg/L, with barrel-stored sake highest. One of the few compounds where "aged sake means vanilla" can be pinned to a number of years.

Maillard & ageing aromasAmino acids meet sugars

"Caramel and soy sauce, born where amino acids meet sugar" — the same route as the char on a dish.

CompoundDescriptorsEffectThresholdConfidence
SotolonDrink
Caramel, black sugar
Caramel · Honey ±Swings 2.3 µg/LDiscrimination threshold in sake; sake holds 0–140 µg/L Established
How it forms, and notes

There are two routes. One joins acetaldehyde with an acid formed from the breakdown of an amino acid (threonine); the other is the reaction between amino acids and sugars (the Maillard reaction). Both proceed over long storage.

★ Mean concentrations are 0.1 without hineka, 0.5 with hineka, and 9.8 µg/L in long-aged sake. The share of samples above threshold is 5% for commercial sake with hineka and 73% for long-aged sake. So the caramel note is a feature not of aged sake but of long-aged sake.

★ Although it sits in this family, it is not a compound made by the Maillard reaction alone. A family name lets one route stand for the group; it does not mean there is only one.

HEMFDrink
Soy sauce
Soy sauce · Caramel Builds Reported
How it forms, and notes

Formed in the reaction between amino acids and sugars (the Maillard reaction).

A principal aroma compound of soy sauce. The soy-sauce note that appears in sake is thought to come from its structural resemblance to sotolon, and from both liquids carrying the same kind of compound — products of a reaction between amino acids and sugars.

FurfuralDrink
Burnt sugar, nuts
Caramel · Roasted nut ±Swings 11000 µg/LThreshold in sake — **the highest on this map**. Even the institute's stored sake only reached 7800 µg/L, short of it Established
How it forms, and notes

Formed as sugars change under heat and long storage.

★ The concentration does climb in aged sake, yet even in stored samples the OAV never reaches 1. A useful reminder that "more of it" and "you can smell it" are not the same thing.

3-MethylbutanalDrink
Malt, honey
Malty · Honey ±Swings 120 µg/LDiscrimination threshold in sake; sake holds a wide 100–4100 µg/L Established
How it forms, and notes

The route differs by type of sake. In long-stored sake it comes from the breakdown of an amino acid (leucine); in namazake it comes from enzymatic oxidation of the isoamyl alcohol upstream of it.

45% of sake showing hineka, and 93% of long-aged sake, are above threshold. It is listed among the compounds contributing to a honey-like aroma.

One of the main compounds of hineka (the other is DMTS). The sharp smell that comes out when namazake is left at room temperature is also this compound. ★ The same molecule appears both in ageing and in the deterioration of namazake, but the routes are different. What this family holds is the long-storage route.

2,5-DimethylpyrazineDrinkFood
Roasted nuts, toastiness
Roasted nut
Pyrazine is usually spoken of not as one molecule but as a family sharing a skeleton. What hangs off that skeleton decides whether it reads as nuts, as earth, or as green pepper. The one here sits on the roasted side. Do not read "pyrazine" as a name for a single smell.
Builds Reported
How it forms, and notes

Born in the reaction between amino acids and sugars under heat (the Maillard reaction). It comes out in quantity when high temperatures are applied, as in roasting and baking.

The card that brings the relation between fermentation and roasting onto this map. In coffee fermentations inoculated with yeast, 2-methylpyrazine and 2,5-dimethylpyrazine have been detected in the roasted beans. The authors suggest that the organic acids increased by fermentation may feed the formation of pyrazines and furans during roasting, but ⚠️ this is a hypothesis, not a demonstration (the authors themselves write that further work is needed).

★★ There is also a report that the length of the fermentation moves the amount of pyrazine. In a study varying the days of anaerobic fermentation, short fermentations (2-8 days) were high in pyrazines, pyrroles and furans, and correlated with a different set of compounds than long ones (10-20 days). In another study, pyrroles and furans serve as a marker for telling processing methods apart. A compound made by heat, whose amount is nonetheless set by the fermentation conditions before it — an instance of the material at the entrance deciding the aroma at the exit. ⚠️ The former study, however, does not make clear whether it measured green or roasted beans. Nothing is asserted here on that basis.

★ On the food side, ethyl dimethylpyrazines are listed among the roasted notes of katsuobushi. The same reaction makes the aged aroma of sake, the char of cooking and the roast of coffee — a compound that embodies the build of this family.

⚠️ For pyrazines in sake, no supporting material is held yet. What is written here is what is known from katsuobushi and coffee.

MethionalDrinkFood
Cooked potato
Cooked potato ±Swings 10 µg/LThreshold in sake. In the institute's stored sake (0–35 years) it reached 17 µg/L, an OAV of about 1.7 Established
How it forms, and notes

Formed by the breakdown of an amino acid (methionine). A sulfur-containing aldehyde.

In sake it contributes to the smell of koji; in shiitake it is among the compounds with the highest FD factor. ★ The phrase "cooked potato" comes from the shiitake study — the sake literature does not use it.

Volatile fatty acidsMade by unintended microbes

"Cheese and sweat, left behind by microbes nobody wanted" — the side that gets managed as a fault.

CompoundDescriptorsEffectThresholdConfidence
Butyric acidDrink
Ginkgo nut, cheese
Ginkgo nut · Cheese Fault 4.3 mg/LDiscrimination threshold in sake; the source records the level in sake as unknown Established
How it forms, and notes

From contamination by hiochi bacteria, or carried over from persimmon tannin.

★ Among the fault aromas on this map, its threshold is fairly high (in mg/L). It works differently from compounds like DMTS that tell in trace amounts: it only shows once it has clearly increased.

Isovaleric acidDrink
Sweaty, like natto
Natto, sweaty · Cheese Fault 0.41 mg/LDiscrimination threshold in sake; the source records the level in sake as unknown Established
How it forms, and notes

Formed when the koji is contaminated by Bacillus subtilis.

Volatile aminesRaw material breaks down

"The fishiness a fish gives up as time passes" — add acid and it stops reaching your nose.

CompoundDescriptorsEffectThresholdConfidence
TrimethylamineFood
The fishiness of fish
Fishy Fault Established
How it forms, and notes

Formed as the TMAO that fish already contain breaks down over time.

Weakly alkaline, so on meeting an acid it turns into a salt and stops evaporating. That is why squeezing a lemon, or pouring something high in acid alongside, actually works. Saltwater and deep-sea fish start with more of it; freshwater fish with less. ★ Fishiness is not one single thing. The lipid-oxidation route is not stopped by acid.

Sulfur off-flavoursRaw material breaks down

"Egg, onion and pickled radish, released when sulfur-bearing amino acids come apart" — potent in the smallest traces.

CompoundDescriptorsEffectThresholdConfidence
Hydrogen sulfideDrink
Boiled egg
Boiled egg Fault 31 µg/LDiscrimination threshold in sake; the source records the level in sake as unknown Established
How it forms, and notes

Formed during fermentation as yeast metabolises sulfur-containing amino acids (the early to middle moromi). Also formed when heat breaks down cysteine and cystine.

Pause before counting this as a fault in a bottle on the shelf. It is perceptible in fermenting moromi and in freshly pasteurised sake, but the source notes it is scarcely detectable in commercial product.

MercaptansDrink
Onion
Onion
Not a single molecule but a collective name for low-molecular-weight thiols. The source describes them collectively, so we keep them that way.
Fault 0.41 µg/LDiscrimination threshold in sake; sake holds 0–2 µg/L (methyl mercaptan) Established
How it forms, and notes

Formed when methionine breaks down under heat and light. A component of hinataka, the sunstruck smell.

This is the one that really is a thiol — it carries the sulfur-hydrogen pair. It still sits apart from the tropical 3MH and 4MMP, because what separates them is not whether sulfur is present but how they arise: those are cut free by yeast from precursors sleeping in the raw material, while this appears when methionine breaks apart under heat and light.

⚠️ The reference standard is ethyl mercaptan, but the one said to predominate in sake is methyl mercaptan.

Dimethyl sulfideDrinkFood
Nori, corn soup
Nori, corn soup ±Swings 6.7 µg/LDiscrimination threshold in sake; sake holds 0–44 µg/L Established
How it forms, and notes

Formed by the breakdown of a protein containing a compound produced when old rice was fumigated.

In sake this sits on the fault side, as the smell of old rice. It is also listed among the compounds of fishy odour, and in katsuobushi it barely changes through the smoking process — a compound that appears on both sides of the table.

⚠️ Note the period. The route the source gives for sake runs through a compound formed when old rice was fumigated with methyl bromide — a practice now banned in Japan.

Dimethyl trisulfideDrink
Pickled radish
Pickled radish · Onion Fault 0.18 µg/LDiscrimination threshold in sake. Sake holds 0–1.1 µg/L — a span that sits barely above the threshold itself Established
How it forms, and notes

Formed during storage, when a precursor left behind by the yeast during the mash breaks down.

The lead role in hineka, the smell that ordinary commercial sake picks up. 65% of sake flagged for hineka and 93% of long-aged sake sit above the threshold. The threshold is so low that a trace decides the impression.

★ Its precursor, called DMTS-P1, is reported to come off the pathway by which yeast rebuilds methionine. The seed of hineka is already in the sake when it leaves the tank — storage only unlocks it.

Reading the table Effect is + (builds aroma) / − (becomes a fault as it rises) / ± (changes face with concentration). Threshold is the minimum you can detect; "—" means we have not pinned down a source. Confidence marks how strong the evidence is, so that suggestions are not dressed up as settled findings. The same molecule can be a virtue in one setting and a fault in another.
Six · Pairing The pairing chapter draws on a separate Japanese-language database and has not been translated yet. It is available on the Japanese version of this page.